HL_6TBV_084

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

6TBV|1|23S1|A|2031, 6TBV|1|23S1|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_084 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0787

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6TBV|1|23S1|G|2027
6TBV|1|23S1|U|2028
6TBV|1|23S1|G|2029
6TBV|1|23S1|6MZ|2030
6TBV|1|23S1|A|2031
6TBV|1|23S1|G|2032
6TBV|1|23S1|A|2033
6TBV|1|23S1|U|2034
6TBV|1|23S1|G|2035
6TBV|1|23S1|C|2036

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L031

50S ribosomal protein L3

Chain L211

50S ribosomal protein L21

Chain L321

50S ribosomal protein L32