HL_6TBV_094

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_094 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1312

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6TBV|1|23S1|A|2471
6TBV|1|23S1|G|2472
6TBV|1|23S1|U|2473
6TBV|1|23S1|U|2474
6TBV|1|23S1|C|2475
6TBV|1|23S1|A|2476
6TBV|1|23S1|U|2477
6TBV|1|23S1|A|2478
6TBV|1|23S1|U|2479

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L061

50S ribosomal protein L6

Chain L161

50S ribosomal protein L16

Chain L361

50S ribosomal protein L36