HL_6TBV_102

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6TBV|1|23S1|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_102 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.065

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6TBV|1|23S1|G|2819
6TBV|1|23S1|A|2820
6TBV|1|23S1|A|2821
6TBV|1|23S1|G|2822
6TBV|1|23S1|A|2823
6TBV|1|23S1|C|2824
6TBV|1|23S1|G|2825
6TBV|1|23S1|A|2826
6TBV|1|23S1|C|2827

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L031

50S ribosomal protein L3

Chain L171

50S ribosomal protein L17