HL_6TBV_105
3D structure
- PDB id
- 6TBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- G(RSP)UICG(2MG)AC
- Length
- 9 nucleotides
- Bulged bases
- 6TBV|1|PTR1|U|33
- QA status
- Modified nucleotides: RSP, 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TBV_105 not in the Motif Atlas
- Homologous match to HL_9DFC_104
- Geometric discrepancy: 0.1075
- The information below is about HL_9DFC_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6TBV|1|PTR1|G|31
6TBV|1|PTR1|RSP|32
6TBV|1|PTR1|U|33
6TBV|1|PTR1|I|34
6TBV|1|PTR1|C|35
6TBV|1|PTR1|G|36
6TBV|1|PTR1|2MG|37
6TBV|1|PTR1|A|38
6TBV|1|PTR1|C|39
Current chains
- Chain PTR1
- P-site Arg-tRNA
Nearby chains
- Chain 16S1
- Small subunit ribosomal RNA; SSU rRNA
- Chain MRN1
- mRNA
- Chain S091
- 30S ribosomal protein S9
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