HL_6TH6_032

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CGCAGGCAG

Length

9 nucleotides

Bulged bases

6TH6|1|BA|G|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TH6_032 not in the Motif Atlas

Homologous match to HL_4V9F_002

Geometric discrepancy: 0.1713

The information below is about HL_4V9F_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

6TH6|1|BA|C|96
6TH6|1|BA|G|97
6TH6|1|BA|C|98
6TH6|1|BA|A|99
6TH6|1|BA|G|100
6TH6|1|BA|G|101
6TH6|1|BA|C|102
6TH6|1|BA|A|103
6TH6|1|BA|G|104

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BX

50S ribosomal protein L24

Chain BZ

50S ribosomal protein L29

Chain Bi

50S ribosomal protein L39e