HL_6TH6_044

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGCA(OMU)CGGC

Length

9 nucleotides

Bulged bases

6TH6|1|BA|G|450

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TH6_044 not in the Motif Atlas

Homologous match to HL_4V9F_014

Geometric discrepancy: 0.2314

The information below is about HL_4V9F_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

6TH6|1|BA|G|449
6TH6|1|BA|G|450
6TH6|1|BA|C|451
6TH6|1|BA|A|452
6TH6|1|BA|OMU|453
6TH6|1|BA|C|454
6TH6|1|BA|G|455
6TH6|1|BA|G|456
6TH6|1|BA|C|457

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BP

50S ribosomal protein L15e

Chain Bl

50S ribosomal protein L44e