HL_6TH6_056

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CCCCAG

Length

6 nucleotides

Bulged bases

6TH6|1|BA|C|955, 6TH6|1|BA|C|956, 6TH6|1|BA|C|957, 6TH6|1|BA|A|958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TH6_056 not in the Motif Atlas

Homologous match to HL_4V9F_026

Geometric discrepancy: 0.3524

The information below is about HL_4V9F_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.2

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

6TH6|1|BA|C|954
6TH6|1|BA|C|955
6TH6|1|BA|C|956
6TH6|1|BA|C|957
6TH6|1|BA|A|958
6TH6|1|BA|G|959

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L15