HL_6TH6_081

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GCGCAU(A2M)UGC

Length

10 nucleotides

Bulged bases

6TH6|1|BA|C|2142, 6TH6|1|BA|A|2143, 6TH6|1|BA|U|2144

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TH6_081 not in the Motif Atlas

Homologous match to HL_4V9F_052

Geometric discrepancy: 0.2275

The information below is about HL_4V9F_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

6TH6|1|BA|G|2139
6TH6|1|BA|C|2140
6TH6|1|BA|G|2141
6TH6|1|BA|C|2142
6TH6|1|BA|A|2143
6TH6|1|BA|U|2144
6TH6|1|BA|A2M|2145
6TH6|1|BA|U|2146
6TH6|1|BA|G|2147
6TH6|1|BA|C|2148

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain Bd

50S ribosomal protein L32e