HL_6TH6_084

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6TH6|1|BA|G|2352

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TH6_084 not in the Motif Atlas

Geometric match to HL_4WF9_049

Geometric discrepancy: 0.1315

The information below is about HL_4WF9_049

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

6TH6|1|BA|C|2350
6TH6|1|BA|U|2351
6TH6|1|BA|G|2352
6TH6|1|BA|OMG|2353
6TH6|1|BA|G|2354
6TH6|1|BA|G|2355
6TH6|1|BA|C|2356
6TH6|1|BA|G|2357
6TH6|1|BA|G|2358

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L10e