HL_6TH6_090

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CCCCGGUGG

Length

9 nucleotides

Bulged bases

6TH6|1|BA|C|2512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TH6_090 not in the Motif Atlas

Homologous match to HL_4V9F_061

Geometric discrepancy: 0.2351

The information below is about HL_4V9F_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

6TH6|1|BA|C|2511
6TH6|1|BA|C|2512
6TH6|1|BA|C|2513
6TH6|1|BA|C|2514
6TH6|1|BA|G|2515
6TH6|1|BA|G|2516
6TH6|1|BA|U|2517
6TH6|1|BA|G|2518
6TH6|1|BA|G|2519

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BP

50S ribosomal protein L15e

Chain Bl

50S ribosomal protein L44e