HL_6TH6_091

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

AGCCCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TH6_091 not in the Motif Atlas

Homologous match to HL_4V9F_062

Geometric discrepancy: 0.1591

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6TH6|1|BA|A|2575
6TH6|1|BA|G|2576
6TH6|1|BA|C|2577
6TH6|1|BA|C|2578
6TH6|1|BA|C|2579
6TH6|1|BA|A|2580
6TH6|1|BA|U|2581
6TH6|1|BA|A|2582
6TH6|1|BA|U|2583

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Bj

50S ribosomal protein L40e