HL_6TH6_092

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

UGCAGCAG

Length

8 nucleotides

Bulged bases

6TH6|1|BA|G|2633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TH6_092 not in the Motif Atlas

Homologous match to HL_4V9F_063

Geometric discrepancy: 0.2818

The information below is about HL_4V9F_063

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6TH6|1|BA|U|2632
6TH6|1|BA|G|2633
6TH6|1|BA|C|2634
6TH6|1|BA|A|2635
6TH6|1|BA|G|2636
6TH6|1|BA|C|2637
6TH6|1|BA|A|2638
6TH6|1|BA|G|2639

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L6

Chain Bj

50S ribosomal protein L40e