HL_6TNN_028

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNN_028 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.1368

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6TNN|1|U|G|1022
6TNN|1|U|A|1023
6TNN|1|U|A|1024
6TNN|1|U|A|1025
6TNN|1|U|C|1026
6TNN|1|U|A|1027
6TNN|1|U|G|1028
6TNN|1|U|C|1029

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain j

50S ribosomal protein L20

Chain w

50S ribosomal protein L30