HL_6TNN_041

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6TNN|1|U|A|1657, 6TNN|1|U|A|1659, 6TNN|1|U|A|1661

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNN_041 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1034

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6TNN|1|U|C|1655
6TNN|1|U|G|1656
6TNN|1|U|A|1657
6TNN|1|U|C|1658
6TNN|1|U|A|1659
6TNN|1|U|C|1660
6TNN|1|U|A|1661
6TNN|1|U|G|1662

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain l

50S ribosomal protein L22

Chain r

50S ribosomal protein L34