HL_6TNN_049

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6TNN|1|U|C|1941, 6TNN|1|U|U|1942, 6TNN|1|U|A|1943

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNN_049 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1536

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6TNN|1|U|G|1937
6TNN|1|U|U|1938
6TNN|1|U|A|1939
6TNN|1|U|A|1940
6TNN|1|U|C|1941
6TNN|1|U|U|1942
6TNN|1|U|A|1943
6TNN|1|U|U|1944
6TNN|1|U|A|1945
6TNN|1|U|A|1946
6TNN|1|U|C|1947

Current chains

Chain U

pre-23S rRNA

Nearby chains