HL_6TNN_055

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6TNN|1|U|A|2295, 6TNN|1|U|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNN_055 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.1369

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6TNN|1|U|C|2291
6TNN|1|U|U|2292
6TNN|1|U|A|2293
6TNN|1|U|A|2294
6TNN|1|U|A|2295
6TNN|1|U|A|2296
6TNN|1|U|G|2297
6TNN|1|U|G|2298
6TNN|1|U|U|2299
6TNN|1|U|A|2300
6TNN|1|U|A|2301
6TNN|1|U|C|2302
6TNN|1|U|G|2303

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain f

50S ribosomal protein L16

Chain o

50S ribosomal protein L27