HL_6TNN_061

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

AGUCCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNN_061 not in the Motif Atlas

Homologous match to HL_7RQB_060

Geometric discrepancy: 0.2029

The information below is about HL_7RQB_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

6TNN|1|U|A|2498
6TNN|1|U|G|2499
6TNN|1|U|U|2500
6TNN|1|U|C|2501
6TNN|1|U|C|2502
6TNN|1|U|A|2503
6TNN|1|U|C|2504
6TNN|1|U|A|2505
6TNN|1|U|U|2506

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain t

50S ribosomal protein L36