HL_6TNN_066

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UGCCAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNN_066 not in the Motif Atlas

Homologous match to HL_7A0S_064

Geometric discrepancy: 0.1614

The information below is about HL_7A0S_064

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_12125.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6TNN|1|U|U|2728
6TNN|1|U|G|2729
6TNN|1|U|C|2730
6TNN|1|U|C|2731
6TNN|1|U|A|2732
6TNN|1|U|A|2733

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain g

50S ribosomal protein L17