HL_6TNU_017

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

6TNU|1|2|C|709, 6TNU|1|2|G|714, 6TNU|1|2|C|726, 6TNU|1|2|G|730, 6TNU|1|2|G|732, 6TNU|1|2|A|733

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_017 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3689

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6TNU|1|2|G|703
6TNU|1|2|C|704
6TNU|1|2|U|705
6TNU|1|2|A|706
6TNU|1|2|A|707
6TNU|1|2|C|708
6TNU|1|2|C|709
6TNU|1|2|U|710
6TNU|1|2|U|711
6TNU|1|2|G|712
6TNU|1|2|A|713
6TNU|1|2|G|714
6TNU|1|2|C|726
6TNU|1|2|U|727
6TNU|1|2|U|728
6TNU|1|2|G|729
6TNU|1|2|G|730
6TNU|1|2|C|731
6TNU|1|2|G|732
6TNU|1|2|A|733
6TNU|1|2|A|734
6TNU|1|2|C|735

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A