HL_6TNU_042

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

6TNU|1|BQ|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_042 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1484

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6TNU|1|BQ|U|194
6TNU|1|BQ|U|195
6TNU|1|BQ|G|196
6TNU|1|BQ|G|197
6TNU|1|BQ|A|198
6TNU|1|BQ|A|199
6TNU|1|BQ|C|200
6TNU|1|BQ|A|201

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AK

60S ribosomal protein L26-A

Chain BE

60S ribosomal protein L4-A

Chain BG

60S ribosomal protein L32