HL_6TNU_064

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6TNU|1|BQ|A|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_064 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.2963

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6TNU|1|BQ|C|1239
6TNU|1|BQ|A|1240
6TNU|1|BQ|U|1241
6TNU|1|BQ|G|1242
6TNU|1|BQ|G|1243
6TNU|1|BQ|A|1244
6TNU|1|BQ|A|1245
6TNU|1|BQ|G|1246
6TNU|1|BQ|U|1247
6TNU|1|BQ|C|1248
6TNU|1|BQ|G|1249

Current chains

Chain BQ

25S rRNA

Nearby chains