HL_6TNU_065

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_065 not in the Motif Atlas

Geometric match to HL_5TBW_028

Geometric discrepancy: 0.3691

The information below is about HL_5TBW_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6TNU|1|BQ|G|1266
6TNU|1|BQ|U|1267
6TNU|1|BQ|G|1268
6TNU|1|BQ|U|1269
6TNU|1|BQ|A|1270
6TNU|1|BQ|A|1271
6TNU|1|BQ|C|1272
6TNU|1|BQ|A|1273
6TNU|1|BQ|A|1274
6TNU|1|BQ|C|1275

Current chains

Chain BQ

25S rRNA

Nearby chains