HL_6TNU_072

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

6TNU|1|BQ|U|1606, 6TNU|1|BQ|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_072 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.09

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6TNU|1|BQ|G|1599
6TNU|1|BQ|U|1600
6TNU|1|BQ|U|1601
6TNU|1|BQ|A|1602
6TNU|1|BQ|A|1603
6TNU|1|BQ|G|1604
6TNU|1|BQ|A|1605
6TNU|1|BQ|U|1606
6TNU|1|BQ|U|1607
6TNU|1|BQ|C|1608

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L25

Chain BF

60S ribosomal protein L19-A

Chain BN

60S ribosomal protein L34-A