HL_6TNU_092
3D structure
- PDB id
- 6TNU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 6TNU|1|BQ|G|2618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TNU_092 not in the Motif Atlas
- Homologous match to HL_5TBW_054
- Geometric discrepancy: 0.134
- The information below is about HL_5TBW_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
6TNU|1|BQ|C|2616
6TNU|1|BQ|U|2617
6TNU|1|BQ|G|2618
6TNU|1|BQ|G|2619
6TNU|1|BQ|G|2620
6TNU|1|BQ|G|2621
6TNU|1|BQ|C|2622
6TNU|1|BQ|G|2623
6TNU|1|BQ|G|2624
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AV
- 60S ribosomal protein L29
- Chain BD
- 60S ribosomal protein L10
- Chain eI
- Eukaryotic translation initiation factor 5A-1
- Chain n
- Transfer RNA; tRNA
Coloring options: