HL_6TNU_095

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_095 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1092

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6TNU|1|BQ|C|2693
6TNU|1|BQ|A|2694
6TNU|1|BQ|A|2695
6TNU|1|BQ|A|2696
6TNU|1|BQ|A|2697
6TNU|1|BQ|G|2698
6TNU|1|BQ|G|2699
6TNU|1|BQ|G|2700

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AP

60S ribosomal protein L42-A

Chain BD

60S ribosomal protein L10

Chain BJ

60S ribosomal protein L21-A

Chain n

Transfer RNA; tRNA