HL_6TNU_105

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6TNU|1|BQ|G|3116, 6TNU|1|BQ|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_105 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.105

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6TNU|1|BQ|C|3110
6TNU|1|BQ|U|3111
6TNU|1|BQ|G|3112
6TNU|1|BQ|A|3113
6TNU|1|BQ|A|3114
6TNU|1|BQ|C|3115
6TNU|1|BQ|G|3116
6TNU|1|BQ|C|3117
6TNU|1|BQ|C|3118
6TNU|1|BQ|U|3119
6TNU|1|BQ|C|3120
6TNU|1|BQ|U|3121
6TNU|1|BQ|A|3122
6TNU|1|BQ|A|3123
6TNU|1|BQ|G|3124

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AD

60S ribosomal protein L9-A

Chain AO

Ubiquitin-60S ribosomal protein L40

Chain AU

60S ribosomal protein L16-A