HL_6TNU_115

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

6TNU|1|BS|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_115 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.2068

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6TNU|1|BS|G|124
6TNU|1|BS|U|125
6TNU|1|BS|A|126
6TNU|1|BS|U|127
6TNU|1|BS|U|128
6TNU|1|BS|C|129

Current chains

Chain BS

5.8S rRNA

Nearby chains

Chain BQ

Large subunit ribosomal RNA; LSU rRNA