HL_6TNU_116

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGUUGGUAG

Length

10 nucleotides

Bulged bases

6TNU|1|m|G|19, 6TNU|1|m|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_116 not in the Motif Atlas

Homologous match to HL_1QF6_001

Geometric discrepancy: 0.279

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6TNU|1|m|C|13
6TNU|1|m|A|14
6TNU|1|m|G|15
6TNU|1|m|U|16
6TNU|1|m|U|17
6TNU|1|m|G|18
6TNU|1|m|G|19
6TNU|1|m|U|20
6TNU|1|m|A|21
6TNU|1|m|G|22

Current chains

Chain m

A-site tRNA

Nearby chains

Chain BQ

Large subunit ribosomal RNA; LSU rRNA