HL_6TNU_121
3D structure
- PDB id
- 6TNU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUCG(1MA)AAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 1MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TNU_121 not in the Motif Atlas
- Homologous match to HL_1QU2_003
- Geometric discrepancy: 0.1995
- The information below is about HL_1QU2_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
6TNU|1|n|G|53
6TNU|1|n|A|54
6TNU|1|n|U|55
6TNU|1|n|C|56
6TNU|1|n|G|57
6TNU|1|n|1MA|58
6TNU|1|n|A|59
6TNU|1|n|A|60
6TNU|1|n|C|61
Current chains
- Chain n
- P-site tRNA
Nearby chains
- Chain AG
- 60S ribosomal protein L11-B
- Chain AP
- 60S ribosomal protein L42-A
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: