HL_6TPQ_003

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

6TPQ|1|U|A|122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_003 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.0974

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6TPQ|1|U|G|120
6TPQ|1|U|G|121
6TPQ|1|U|A|122
6TPQ|1|U|A|123
6TPQ|1|U|A|124
6TPQ|1|U|C|125

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain m

50S ribosomal protein L23

Chain r

50S ribosomal protein L34