HL_6TPQ_004

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGUAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2423

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6TPQ|1|U|C|134
6TPQ|1|U|G|135
6TPQ|1|U|U|136
6TPQ|1|U|A|137
6TPQ|1|U|A|138
6TPQ|1|U|U|139
6TPQ|1|U|G|140
6TPQ|1|U|G|141

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain m

50S ribosomal protein L23