HL_6TPQ_022

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_022 not in the Motif Atlas

Geometric match to HL_5J7L_156

Geometric discrepancy: 0.3543

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

6TPQ|1|U|G|757
6TPQ|1|U|G|758
6TPQ|1|U|U|759
6TPQ|1|U|A|760
6TPQ|1|U|A|761
6TPQ|1|U|C|762
6TPQ|1|U|A|763
6TPQ|1|U|C|764

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2