HL_6TPQ_028

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_028 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.1326

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6TPQ|1|U|G|1022
6TPQ|1|U|A|1023
6TPQ|1|U|A|1024
6TPQ|1|U|A|1025
6TPQ|1|U|C|1026
6TPQ|1|U|A|1027
6TPQ|1|U|G|1028
6TPQ|1|U|C|1029

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain j

50S ribosomal protein L20

Chain w

50S ribosomal protein L30