HL_6TPQ_032

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_032 not in the Motif Atlas

Homologous match to HL_7A0S_031

Geometric discrepancy: 0.0839

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6TPQ|1|U|C|1260
6TPQ|1|U|G|1261
6TPQ|1|U|G|1262
6TPQ|1|U|A|1263
6TPQ|1|U|A|1264
6TPQ|1|U|G|1265

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain e

50S ribosomal protein L15

Chain j

50S ribosomal protein L20

Chain k

50S ribosomal protein L21