HL_6TPQ_033
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TPQ_033 not in the Motif Atlas
- Homologous match to HL_4WF9_032
- Geometric discrepancy: 0.1043
- The information below is about HL_4WF9_032
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
6TPQ|1|U|G|1318
6TPQ|1|U|U|1319
6TPQ|1|U|G|1320
6TPQ|1|U|A|1321
6TPQ|1|U|G|1322
6TPQ|1|U|A|1323
6TPQ|1|U|A|1324
6TPQ|1|U|U|1325
6TPQ|1|U|C|1326
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain g
- 50S ribosomal protein L17
- Chain l
- 50S ribosomal protein L22
Coloring options: