HL_6TPQ_034

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

6TPQ|1|U|C|1362, 6TPQ|1|U|U|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_034 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.0914

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

6TPQ|1|U|G|1361
6TPQ|1|U|C|1362
6TPQ|1|U|U|1363
6TPQ|1|U|C|1364
6TPQ|1|U|G|1365
6TPQ|1|U|U|1366
6TPQ|1|U|C|1367

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain g

50S ribosomal protein L17

Chain l

50S ribosomal protein L22