HL_6TPQ_038

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

6TPQ|1|U|C|1537, 6TPQ|1|U|U|1541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_038 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1765

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6TPQ|1|U|G|1536
6TPQ|1|U|C|1537
6TPQ|1|U|A|1538
6TPQ|1|U|A|1539
6TPQ|1|U|A|1540
6TPQ|1|U|U|1541
6TPQ|1|U|C|1542

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2