HL_6TPQ_041

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6TPQ|1|U|A|1657, 6TPQ|1|U|A|1659, 6TPQ|1|U|A|1661

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_041 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.0963

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6TPQ|1|U|C|1655
6TPQ|1|U|G|1656
6TPQ|1|U|A|1657
6TPQ|1|U|C|1658
6TPQ|1|U|A|1659
6TPQ|1|U|C|1660
6TPQ|1|U|A|1661
6TPQ|1|U|G|1662

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain l

50S ribosomal protein L22

Chain r

50S ribosomal protein L34