HL_6TPQ_051

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6TPQ|1|U|A|2057, 6TPQ|1|U|A|2058, 6TPQ|1|U|G|2059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_051 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1146

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

6TPQ|1|U|G|2054
6TPQ|1|U|U|2055
6TPQ|1|U|G|2056
6TPQ|1|U|A|2057
6TPQ|1|U|A|2058
6TPQ|1|U|G|2059
6TPQ|1|U|A|2060
6TPQ|1|U|U|2061
6TPQ|1|U|G|2062
6TPQ|1|U|C|2063

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain X

50S ribosomal protein L3

Chain p

50S ribosomal protein L32