HL_6TPQ_052

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CUUGGAAACCGGAGCGCCAGCUUUGGUGGAGG

Length

32 nucleotides

Bulged bases

6TPQ|1|U|U|2158, 6TPQ|1|U|G|2159, 6TPQ|1|U|C|2172, 6TPQ|1|U|U|2177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TPQ|1|U|C|2156
6TPQ|1|U|U|2157
6TPQ|1|U|U|2158
6TPQ|1|U|G|2159
6TPQ|1|U|G|2160
6TPQ|1|U|A|2161
6TPQ|1|U|A|2162
6TPQ|1|U|A|2163
6TPQ|1|U|C|2164
6TPQ|1|U|C|2165
6TPQ|1|U|G|2166
6TPQ|1|U|G|2167
6TPQ|1|U|A|2168
6TPQ|1|U|G|2169
6TPQ|1|U|C|2170
6TPQ|1|U|G|2171
6TPQ|1|U|C|2172
6TPQ|1|U|C|2173
6TPQ|1|U|A|2174
6TPQ|1|U|G|2175
6TPQ|1|U|C|2176
6TPQ|1|U|U|2177
6TPQ|1|U|U|2178
6TPQ|1|U|U|2179
6TPQ|1|U|G|2180
6TPQ|1|U|G|2181
6TPQ|1|U|U|2182
6TPQ|1|U|G|2183
6TPQ|1|U|G|2184
6TPQ|1|U|A|2185
6TPQ|1|U|G|2186
6TPQ|1|U|G|2187

Current chains

Chain U

pre-23S rRNA

Nearby chains