HL_6TPQ_054

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6TPQ|1|U|G|2277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_054 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1119

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6TPQ|1|U|C|2275
6TPQ|1|U|U|2276
6TPQ|1|U|G|2277
6TPQ|1|U|G|2278
6TPQ|1|U|G|2279
6TPQ|1|U|G|2280
6TPQ|1|U|C|2281
6TPQ|1|U|G|2282
6TPQ|1|U|G|2283

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain f

50S ribosomal protein L16

Chain o

50S ribosomal protein L27