HL_6TPQ_060

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

6TPQ|1|U|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_060 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.0898

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6TPQ|1|U|C|2431
6TPQ|1|U|G|2432
6TPQ|1|U|C|2433
6TPQ|1|U|A|2434
6TPQ|1|U|U|2435
6TPQ|1|U|G|2436
6TPQ|1|U|G|2437
6TPQ|1|U|A|2438
6TPQ|1|U|A|2439
6TPQ|1|U|G|2440

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain e

50S ribosomal protein L15