HL_6TPQ_069
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- AAAGAUGAU
- Length
- 9 nucleotides
- Bulged bases
- 6TPQ|1|U|A|2843
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TPQ_069 not in the Motif Atlas
- Homologous match to HL_5J7L_201
- Geometric discrepancy: 0.1018
- The information below is about HL_5J7L_201
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64690.6
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6TPQ|1|U|A|2842
6TPQ|1|U|A|2843
6TPQ|1|U|A|2844
6TPQ|1|U|G|2845
6TPQ|1|U|A|2846
6TPQ|1|U|U|2847
6TPQ|1|U|G|2848
6TPQ|1|U|A|2849
6TPQ|1|U|U|2850
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain X
- 50S ribosomal protein L3
- Chain g
- 50S ribosomal protein L17
Coloring options: