HL_6TPQ_070

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GGCGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_070 not in the Motif Atlas

Homologous match to HL_7RQB_069

Geometric discrepancy: 0.1249

The information below is about HL_7RQB_069

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6TPQ|1|U|G|2879
6TPQ|1|U|G|2880
6TPQ|1|U|C|2881
6TPQ|1|U|G|2882
6TPQ|1|U|A|2883
6TPQ|1|U|C|2884

Current chains

Chain U

pre-23S rRNA

Nearby chains