HL_6U8D_001

3D structure

PDB id

6U8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of hepatitis C virus IRES junction IIIabc in complex with Fab HCV2

Experimental method

X-RAY DIFFRACTION

Resolution

1.81 Å

Loop

Sequence

GAGUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37462.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6U8D|1|A|G|161
6U8D|1|A|A|162
6U8D|1|A|G|163
6U8D|1|A|U|164
6U8D|1|A|A|165
6U8D|1|A|C|166

Current chains

Chain A

JIIIabc RNA (68-MER)

Nearby chains

Chain H

Heavy chain of Fab HCV2

Chain L

Light chain of Fab HCV2