HL_6U8D_002

3D structure

PDB id

6U8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of hepatitis C virus IRES junction IIIabc in complex with Fab HCV2

Experimental method

X-RAY DIFFRACTION

Resolution

1.81 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_85603.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

304

Unit IDs

6U8D|1|A|G|180
6U8D|1|A|G|198
6U8D|1|A|A|199
6U8D|1|A|A|200
6U8D|1|A|A|201
6U8D|1|A|C|219

Current chains

Chain A

JIIIabc RNA (68-MER)

Nearby chains