HL_6UCQ_103
3D structure
- PDB id
- 6UCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome recycling complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CAGGGUAG
- Length
- 8 nucleotides
- Bulged bases
- 6UCQ|1|1x|G|18, 6UCQ|1|1x|G|19, 6UCQ|1|1x|U|20, 6UCQ|1|1x|A|21
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6UCQ_103 not in the Motif Atlas
- Homologous match to HL_4V9K_033
- Geometric discrepancy: 0.3066
- The information below is about HL_4V9K_033
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
6UCQ|1|1x|C|13
6UCQ|1|1x|A|14
6UCQ|1|1x|G|15
6UCQ|1|1x|G|18
6UCQ|1|1x|G|19
6UCQ|1|1x|U|20
6UCQ|1|1x|A|21
6UCQ|1|1x|G|22
Current chains
- Chain 1x
- P-site and E-site tRNAs
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- 50S ribosomal protein L5
- Chain 1y
- Transfer RNA; tRNA
Coloring options: