HL_6UF1_003

3D structure

PDB id

6UF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pistol ribozyme transition-state analog vanadate

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUUGAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UF1_003 not in the Motif Atlas

Homologous match to HL_6UEY_003

Geometric discrepancy: 0.0819

The information below is about HL_6UEY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6UF1|1|C|G|5
6UF1|1|C|U|6
6UF1|1|C|U|7
6UF1|1|C|U|8
6UF1|1|C|G|9
6UF1|1|C|A|10
6UF1|1|C|G|11
6UF1|1|C|C|12

Current chains

Chain C

RNA (50-MER)

Nearby chains

Chain A

Pistol ribozyme