HL_6UGG_003

3D structure

PDB id

6UGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of unmodified E. coli tRNA(Asp)

Experimental method

X-RAY DIFFRACTION

Resolution

1.95 Å

Loop

Sequence

GUUCGAGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UGG_003 not in the Motif Atlas

Homologous match to HL_6UGG_006

Geometric discrepancy: 0.0458

The information below is about HL_6UGG_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

6UGG|1|A|G|53
6UGG|1|A|U|54
6UGG|1|A|U|55
6UGG|1|A|C|56
6UGG|1|A|G|57
6UGG|1|A|A|58
6UGG|1|A|G|59
6UGG|1|A|U|60
6UGG|1|A|C|61

Current chains

Chain A

tRNAasp

Nearby chains