HL_6UO1_025

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGCCCACCAGCC

Length

12 nucleotides

Bulged bases

6UO1|1|1A|C|888, 6UO1|1|1A|C|889

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6UO1|1|1A|G|882
6UO1|1|1A|G|883
6UO1|1|1A|C|884
6UO1|1|1A|C|885
6UO1|1|1A|C|886
6UO1|1|1A|A|887
6UO1|1|1A|C|888
6UO1|1|1A|C|889
6UO1|1|1A|A|890
6UO1|1|1A|G|892
6UO1|1|1A|C|893
6UO1|1|1A|C|894

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13

Chain 1w

Transfer RNA; tRNA